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THAPSDRAFT_263327 MFS transporter [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443424, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263327
Gene description
MFS transporter
Locus tag
THAPSDRAFT_263327
Gene type
protein coding
RNA name
MFS transporter
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263327 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Sequence:
Chromosome: 8; NC_012071.1 (17027..18696)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
MFS transporter
XP_002291680.1
  • This gene was most similar to putative and unknown proteins from A. thaliana. It contains InterPro domain #003662, which is characteristic of general substrate transporters. It also has reasonable similarity to Pfam model #00083 for sugar (and other) transporters.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    17027..18696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291644.1 → XP_002291680.1  MFS transporter, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291680.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C6A1
    Conserved Domains (2) summary
    cd06174
    Location:12 → 183
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:5 → 372
    MFS_1; Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version

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