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THAPS_269316 acyl-CoA dehydrogenase-like protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443414, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_269316
Gene description
acyl-CoA dehydrogenase-like protein
Locus tag
THAPS_269316
Gene type
protein coding
RNA name
acyl-CoA dehydrogenase-like protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_269316 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Sequence:
Chromosome: 7; NC_012070.1 (1949249..1951974, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation using acyl-CoA dehydrogenase IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
acyl-CoA dehydrogenase-like protein
XP_002296360.1
  • some similarity to other organisms (42% amino acid idenitity); Supporting EST evidence.; oxidoreductase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1949249..1951974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296324.1 → XP_002296360.1  acyl-CoA dehydrogenase-like protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296360.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YP04
    Conserved Domains (3) summary
    PRK09463
    Location:48 → 780
    fadE; acyl-CoA dehydrogenase; Reviewed
    pfam09317
    Location:492 → 770
    DUF1974; Domain of unknown function (DUF1974)
    cl09933
    Location:130 → 396
    ACAD; Acyl-CoA dehydrogenase
Nucleotide Protein
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