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THAPSDRAFT_264726 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443401, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264726
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_264726
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264726 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_012083.1 (601218..601606, complement)

Chromosome 20 - NC_012083.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012083.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002294766.1
  • contains some similarity to response regulator receiver domain of bacterial two componaent systems. Does not appear to contain all conserved motifs.; contains similarity to receiver domain of response regulator protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012083.1 Reference assembly

    Range
    601218..601606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294730.1 → XP_002294766.1  hypothetical protein THAPSDRAFT_264726, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294766.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CF05
    Conserved Domains (2) summary
    COG0745
    Location:1 → 122
    OmpR; DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription]
    cd00156
    Location:3 → 124
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials