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THAPSDRAFT_11488 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443344, updated on 26-Jun-2024

Summary

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Gene symbol
THAPSDRAFT_11488
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_11488
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_11488 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Sequence:
Chromosome: 20; NC_012083.1 (246697..248380)

Chromosome 20 - NC_012083.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012083.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cupric reductase (NADH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferric-chelate reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in copper ion import IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012083.1 Reference assembly

    Range
    246697..248380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294539.1 → XP_002294575.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294575.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CEP1
    Conserved Domains (2) summary
    pfam01794
    Location:269 → 365
    Ferric_reduct; Ferric reductase like transmembrane component
    cl21494
    Location:362 → 421
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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