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THAPSDRAFT_39173 v-type h-atpase subunit [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443115, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_39173
Gene description
v-type h-atpase subunit
Locus tag
THAPSDRAFT_39173
Gene type
protein coding
RNA name
v-type h-atpase subunit
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012064.1 (1803448..1804398, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene fatty acid hydroxylase, cytochrome P450

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vacuolar membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
v-type h-atpase subunit
XP_002286853.1
  • EST support, presence of defining domains and sequence similiarity indicate putative V-type H-ATPase D subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    1803448..1804398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286817.1 → XP_002286853.1  v-type h-atpase subunit [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286853.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BR92
    Conserved Domains (1) summary
    pfam01813
    Location:10 → 202
    ATP-synt_D; ATP synthase subunit D
Nucleotide Protein
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