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gltD hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442759, updated on 21-Dec-2023

Summary

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Gene symbol
gltD
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_269160
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See gltD in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Sequence:
Chromosome: 6; NC_012069.1 (1557112..1559219, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002291583.1
  • Small subunit of NAD(P)H-dependent GOGAT, catalyzes the formation of two molecules glutamate from one glutamine and one oxoglutarate in the presence of NAD(P)H. Note: this subunit is not present in ferredoxin-dependent GOGAT. It is a single gene in Thalassiosira whereas it is fused to the large subunit in green plants, animals and fungi. K Valentins original descrption; gltD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1557112..1559219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291547.1 → XP_002291583.1  hypothetical protein THAPSDRAFT_269160 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291583.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C4A8
    Conserved Domains (3) summary
    COG0493
    Location:1 → 436
    GltD; NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]
    pfam00070
    Location:102 → 180
    Pyr_redox; Pyridine nucleotide-disulphide oxidoreductase
    cl19102
    Location:2 → 88
    Fer4_8; 4Fe-4S dicluster domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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