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THAPSDRAFT_269158 sugar transporter [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442758, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_269158
Gene description
sugar transporter
Locus tag
THAPSDRAFT_269158
Gene type
protein coding
RNA name
sugar transporter
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_269158 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Sequence:
Chromosome: 6; NC_012069.1 (1552041..1554098, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexose transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monosaccharide transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
sugar transporter
XP_002291581.1
  • Strong hits in other genomes and pfam and tigr hmms.EST in phaeodactylum.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1552041..1554098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291545.1 → XP_002291581.1  sugar transporter [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291581.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C4A5
    Conserved Domains (2) summary
    cd06174
    Location:50 → 471
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam00083
    Location:51 → 481
    Sugar_tr; Sugar (and other) transporter
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials