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THAPSDRAFT_262960 sodium/hydrogen exchanger, Na+/H+ exchanger, antiporter [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442735, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262960
Gene description
sodium/hydrogen exchanger, Na+/H+ exchanger, antiporter
Locus tag
THAPSDRAFT_262960
Gene type
protein coding
RNA name
sodium/hydrogen exchanger, Na+/H+ exchanger, antiporter
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_262960 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Sequence:
Chromosome: 6; NC_012069.1 (1437538..1438888, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene 3-ketoacyl-coa thiolase, mitochondrial Neighboring gene 19kDa subunit of RNA polymerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sodium:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
sodium/hydrogen exchanger, Na+/H+ exchanger, antiporter
XP_002291556.1
  • Na+/H+ exchange proteins eject protons from cells

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1437538..1438888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291520.1 → XP_002291556.1  sodium/hydrogen exchanger, Na+/H+ exchanger, antiporter, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291556.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C458
    Conserved Domains (1) summary
    pfam00999
    Location:12 → 386
    Na_H_Exchanger; Sodium/hydrogen exchanger family
Nucleotide Protein
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