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NDK1 probable nucleoside disphosphate kinase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442665, updated on 21-Dec-2023

Summary

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Gene symbol
NDK1
Gene description
probable nucleoside disphosphate kinase
Locus tag
THAPSDRAFT_12070
Gene type
protein coding
RNA name
probable nucleoside disphosphate kinase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See NDK1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
3
Sequence:
Chromosome: 23; NC_012086.1 (295638..296391, complement)

Chromosome 23 - NC_012086.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene aminotransferase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012086.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside diphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in GTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
probable nucleoside disphosphate kinase
XP_002295246.1
  • Probable nucleoside disphosphate kinase (NDK) (NDPK) (NDP kinase) similar to gi|127984|sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18) (model%: 86, hit%: 97, score: 520, %id: 66) [Rattus norvegicus]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012086.1 Reference assembly

    Range
    295638..296391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295210.1 → XP_002295246.1  probable nucleoside disphosphate kinase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295246.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CGD4
    Conserved Domains (2) summary
    cl00335
    Location:1 → 147
    NDPk; Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are ...
    pfam00334
    Location:2 → 133
    NDK; Nucleoside diphosphate kinase
Nucleotide Protein
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