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THAPSDRAFT_38788 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442636, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_38788
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_38788
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_38788 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
1
Sequence:
Chromosome: 23; NC_012086.1 (149323..149514)

Chromosome 23 - NC_012086.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ABC transporter Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012086.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002295140.1
  • The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue.; hypothetical protein with putative FYVE zn-finger, rabphilin/VPS27/FAB1 type-domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012086.1 Reference assembly

    Range
    149323..149514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295104.1 → XP_002295140.1  hypothetical protein THAPSDRAFT_38788, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295140.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CG80
    Conserved Domains (1) summary
    pfam01363
    Location:1 → 60
    FYVE; FYVE zinc finger
Nucleotide Protein
Heading Accession and Version

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