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THAPSDRAFT_23187 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442412, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_23187
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_23187
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_23187 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_012069.1 (1301774..1305554)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002291141.1
  • supported by cDNAs; hypothetical protein with clear similarity to proteins of unknown function

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1301774..1305554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291105.1 → XP_002291141.1  hypothetical protein THAPSDRAFT_23187 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291141.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C677
    Conserved Domains (2) summary
    pfam05285
    Location:503 → 815
    SDA1; SDA1
    pfam08158
    Location:131 → 151
    NUC130_3NT; NUC130/3NT domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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