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THAPSDRAFT_41106 cell cycle control protein cwf4 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442409, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_41106
Gene description
cell cycle control protein cwf4
Locus tag
THAPSDRAFT_41106
Gene type
protein coding
RNA name
cell cycle control protein cwf4
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_41106 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Sequence:
Chromosome: 6; NC_012069.1 (1289849..1292486, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene amino acid/polyamine transporter Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene dihydrodiol dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cell cycle control protein cwf4
XP_002291522.1
  • partially supported by a Thalassiosira EST

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1289849..1292486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291486.1 → XP_002291522.1  cell cycle control protein cwf4 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291522.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C670
    Conserved Domains (2) summary
    smart00386
    Location:85 → 117
    HAT; HAT (Half-A-TPR) repeats
    sd00006
    Location:74 → 99
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials