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THAPSDRAFT_23175 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442405, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_23175
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_23175
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_23175 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_012069.1 (1269319..1271983, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene probable acyl-coa dehydrogenase, short/branched chain specific Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetolactate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoleucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in valine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of acetolactate synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1269319..1271983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291483.1 → XP_002291519.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291519.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C663
    Conserved Domains (4) summary
    cd07035
    Location:126 → 293
    TPP_PYR_POX_like; Pyrimidine (PYR) binding domain of POX and related proteins
    TIGR00118
    Location:123 → 806
    acolac_lg; acetolactate synthase, large subunit, biosynthetic type
    pfam00205
    Location:408 → 547
    TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
    cl01629
    Location:609 → 796
    TPP_enzymes; Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and ...
Nucleotide Protein
Heading Accession and Version

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