U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

THAPSDRAFT_10683 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442126, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
THAPSDRAFT_10683
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_10683
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See THAPSDRAFT_10683 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Sequence:
Chromosome: 17; NC_012080.1 (411984..412806)

Chromosome 17 - NC_012080.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene t-complex protein 1 zeta subunit

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012080.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012080.1 Reference assembly

    Range
    411984..412806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294356.1 → XP_002294392.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294392.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CE82
    Conserved Domains (1) summary
    cd01729
    Location:32 → 120
    LSm7; Like-Sm protein 7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials