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THAPSDRAFT_264237 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7441835, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264237
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_264237
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264237 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Sequence:
Chromosome: 14; NC_012077.1 (898125..899233)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables adenosylmethionine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thermospermine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spermidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002293827.1
  • possibly involved in polyamine biosynthesis; low similarity to spermidine synthase; hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    898125..899233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293791.1 → XP_002293827.1  hypothetical protein THAPSDRAFT_264237, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293827.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CCU2
    Conserved Domains (1) summary
    cl17173
    Location:1 → 114
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials