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vangl1.L VANGL planar cell polarity protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734910, updated on 4-Nov-2024

Summary

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Official Symbol
vangl1.L
Official Full Name
VANGL planar cell polarity protein 1 L homeolog
Primary source
Xenbase:XB-GENE-5940715
Locus tag
XELAEV_18011208mg
See related
EnsemblRapid:ENSXLAG00005023497 AllianceGenome:Xenbase:XB-GENE-5940715
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
stb2; vangl1
Summary
Predicted to be located in plasma membrane. Is expressed in mesoderm; nervous system; pharyngeal arch; and vestibuloauditory system. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See vangl1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (779136..790641, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (772667..782010, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene protein mab-21-like 3 Neighboring gene solute carrier family 22 member 15 gene 1 L homeolog Neighboring gene protein O-glucosyltransferase 1 L homeolog Neighboring gene translocase of inner mitochondrial membrane domain containing 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Neural crest specification by Prohibitin1 depends on transcriptional regulation of prl3 and vangl1. Deichmann C, et al. Genesis, 2015 Oct. PMID 26259516
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130980

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
VANGL planar cell polarity protein 1 L homeolog
Names
van gogh
vang-like 1 (van gogh)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096375.1 → NP_001089844.1  VANGL planar cell polarity protein 1 L homeolog

    See identical proteins and their annotated locations for NP_001089844.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108531
    UniProtKB/TrEMBL
    Q32NQ1
    Conserved Domains (1) summary
    pfam06638
    Location:5 → 497
    Strabismus; Strabismus protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    779136..790641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581117.1 → XP_041437051.1  VANGL planar cell polarity protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HBP1, A0A974HX91
    Related
    ENSXLAP00005069526.1, ENSXLAT00005071061.1
    Conserved Domains (1) summary
    pfam06638
    Location:2 → 497
    Strabismus; Strabismus protein

  2. XM_018245340.2 → XP_018100829.1  VANGL planar cell polarity protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HBP1, A0A974HX91
    Related
    ENSXLAP00005069471.1, ENSXLAT00005071006.1
    Conserved Domains (1) summary
    pfam06638
    Location:2 → 497
    Strabismus; Strabismus protein

  3. XM_018245339.2 → XP_018100828.1  VANGL planar cell polarity protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HBP1, A0A974HX91
    Conserved Domains (1) summary
    pfam06638
    Location:2 → 497
    Strabismus; Strabismus protein

  4. XM_018245338.2 → XP_018100827.1  VANGL planar cell polarity protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HBP1, A0A974HX91
    Related
    ENSXLAP00005069502.1, ENSXLAT00005071040.1
    Conserved Domains (1) summary
    pfam06638
    Location:2 → 497
    Strabismus; Strabismus protein
Nucleotide Protein Strain
Heading Accession and Version

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