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larp6.S La ribonucleoprotein 6, translational regulator S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734774, updated on 4-Nov-2024

Summary

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Official Symbol
larp6.S
Official Full Name
La ribonucleoprotein 6, translational regulator S homeolog
Primary source
Xenbase:XB-GENE-866291
Locus tag
XELAEV_18020688mg
See related
EnsemblRapid:ENSXLAG00005007794 AllianceGenome:Xenbase:XB-GENE-866291
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
larp6
Summary
Predicted to enable mRNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See larp6.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (55779061..55799170)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (54463513..54484683)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type 1 domain containing 4 S homeolog Neighboring gene leucine-rich repeat-containing protein 49-like Neighboring gene threonine--tRNA ligase 2, cytoplasmic Neighboring gene N6-Methyl-AMP deaminase S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130966

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
La ribonucleoprotein 6, translational regulator S homeolog; la ribonucleoprotein domain family member 6 S homeolog
Names
La ribonucleoprotein domain family member 6 S homeolog
La ribonucleoprotein domain family, member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096242.1 → NP_001089711.1  La ribonucleoprotein 6, translational regulator S homeolog

    See identical proteins and their annotated locations for NP_001089711.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106385
    UniProtKB/TrEMBL
    Q3KQ50
    Related
    ENSXLAP00005022299.1, ENSXLAT00005022991.1
    Conserved Domains (3) summary
    cd08033
    Location:98 → 174
    LARP_6; La RNA-binding domain of La-related protein 6
    cd12289
    Location:189 → 297
    RRM_LARP6; RNA recognition motif in La-related protein 6 (LARP6) and similar proteins
    pfam12901
    Location:463 → 477
    SUZ-C; SUZ-C motif

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    55779061..55799170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254457.2 → XP_018109946.1  la ribonucleoprotein domain family member 6 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GT37, A0A974D880
    Related
    ENSXLAP00005022258.1, ENSXLAT00005022949.1

  2. XM_018254458.2 → XP_018109947.1  la ribonucleoprotein domain family member 6 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UTS9
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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