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nkrf NFKB repressing factor [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733948, updated on 4-Nov-2024

Summary

Official Symbol
nkrfprovided by Xenbase
Official Full Name
NFKB repressing factorprovided by Xenbase
Primary source
Xenbase:XB-GENE-877251
See related
Ensembl:ENSXETG00000007438 AllianceGenome:Xenbase:XB-GENE-877251
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
nrf; itba4
Summary
Predicted to enable nucleic acid binding activity. Orthologous to human NKRF (NFKB repressing factor). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See nkrf in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (59697889..59704430, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (38562793..38569340, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100492077 Neighboring gene ubiquitin conjugating enzyme E2 A Neighboring gene NFKB activating protein Neighboring gene A-kinase anchoring protein 14

Genomic regions, transcripts, and products

General protein information

Preferred Names
NF-kappa-B-repressing factor
Names
NF-kappaB repressing factor
nkrf (NF-kappaB repressing factor)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045660.1NP_001039125.1  NF-kappa-B-repressing factor

    See identical proteins and their annotated locations for NP_001039125.1

    Status: PROVISIONAL

    Source sequence(s)
    CR942475
    UniProtKB/TrEMBL
    F7C9T7, Q28C35
    Related
    ENSXETP00000016185.3, ENSXETT00000016185.4
    Conserved Domains (4) summary
    cd02640
    Location:703762
    R3H_NRF; R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the ...
    smart00358
    Location:456517
    DSRM; Double-stranded RNA binding motif
    pfam11952
    Location:16104
    XTBD; XRN-Two Binding Domain, XTBD
    cl00054
    Location:550612
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    59697889..59704430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)