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bicc1 BicC family RNA binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733856, updated on 4-Nov-2024

Summary

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Official Symbol
bicc1provided by Xenbase
Official Full Name
BicC family RNA binding protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-488512
See related
Ensembl:ENSXETG00000005117 AllianceGenome:Xenbase:XB-GENE-488512
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
bicc; xBic-C; bicc1-a; bicc1-b; x-Bic-C; Bicaudal-C
Summary
Predicted to enable RNA binding activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See bicc1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
21
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (15778081..15963811)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (7535831..7647795)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene deoxynucleotidyltransferase, terminal, interacting protein 2 Neighboring gene transcription factor A, mitochondrial Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein-like Neighboring gene uncharacterized LOC105948002 Neighboring gene family with sequence similarity 13 member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein bicaudal C homolog 1
Names
bicaudal C homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    15778081..15963811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031905224.1 → XP_031761084.1  protein bicaudal C homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QUA6, F7CAX7
    Related
    ENSXETP00000011134.5, ENSXETT00000011134.5
    Conserved Domains (3) summary
    cd09520
    Location:871 → 935
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    pfam17905
    Location:337 → 392
    KH_10; GLD-3 KH domain 5
    cl00098
    Location:47 → 127
    KH-I; K homology (KH) RNA-binding domain, type I

  2. XM_031905225.1 → XP_031761085.1  protein bicaudal C homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QUA6, A0A8J1JVM3
    Conserved Domains (5) summary
    cd09520
    Location:870 → 934
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    pfam17905
    Location:337 → 392
    KH_10; GLD-3 KH domain 5
    cd22420
    Location:47 → 127
    KH-I_BICC1_rpt1; first type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22421
    Location:132 → 201
    KH-I_BICC1_rpt2; second type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22422
    Location:285 → 350
    KH-I_BICC1_rpt3; third type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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