TUBA1B tubulin alpha 1b [Sus scrofa (pig)] - Gene

Summary

Gene symbol: TUBA1B
Gene description: tubulin alpha 1b
See related: Ensembl:ENSSSCG00000000190
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: TUBA3
Annotation information: Annotation category: partial on reference assembly
Expression: Ubiquitous expression in ovary (RPKM 890.7), spleen (RPKM 526.0) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	5	NC_010447.5 (15150229..15153620, complement)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	5	NC_010447.4 (15556615..15560002, complement)

Chromosome 5 - NC_010447.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Binding to the outside surface of the microtubule could facilitate access of tubulin acetyltransferase to its luminal site of action if microtubules undergo lateral opening between protofilaments
Title: Effects of tubulin acetylation and tubulin acetyltransferase binding on microtubule structure.
Results describe the expression pattern of acetylated alpha-tubulin at different stages of testis development confirm that only Ac-alpha-Tu is specific to germ cells.
Title: Expression pattern of acetylated alpha-tubulin in porcine spermatogonia.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

D22S1042 (e-PCR)
- UniSTS:67652

RH48063 (e-PCR)
- UniSTS:67653

RH78682 (e-PCR)
- UniSTS:80224

Tuba1a (e-PCR), detects polymorphism
- UniSTS:532393

PMC154451P2 (e-PCR)
- UniSTS:271312

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables structural constituent of cytoskeleton	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in microtubule cytoskeleton organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in mitotic cell cycle	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in microtubule	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tubulin alpha-1B chain

Names: alpha-tubulin ubiquitous; tubulin K-alpha-1; tubulin alpha 3; tubulin alpha-ubiquitous chain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.