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LINC00992 long intergenic non-protein coding RNA 992 [ Homo sapiens (human) ]

Gene ID: 728342, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00992provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 992provided by HGNC
Primary source
HGNC:HGNC:48943
See related
AllianceGenome:HGNC:48943
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ERINA
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00992 in Genome Data Viewer
Location:
5q23.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (117415512..117579744)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (117928173..118092131)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (116751208..116915439)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L35a pseudogene 15 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:116679194-116679716 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:116679717-116680239 Neighboring gene uncharacterized LOC105379139 Neighboring gene MPRA-validated peak5430 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:116740061-116740561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22954 Neighboring gene uncharacterized LOC124900192 Neighboring gene uncharacterized LOC124901050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:116868532-116869048 Neighboring gene protein tyrosine phosphatase receptor type D pseudogene Neighboring gene long intergenic non-protein coding RNA 2147 Neighboring gene RPL7L1 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. ERINA Is an Estrogen-Responsive LncRNA That Drives Breast Cancer through the E2F1/RB1 Pathway. Fang Z, et al. Cancer Res, 2020 Oct 15. PMID 32826278, Free PMC Article
  2. LINC00992 exerts oncogenic activities in prostate cancer via regulation of SOX4. Fu C, et al. Exp Cell Res, 2021 Nov 1. PMID 34599930
  3. LINC00992 contributes to the oncogenic phenotypes in prostate cancer via targeting miR-3935 and augmenting GOLM1 expression. Chen J, et al. BMC Cancer, 2020 Aug 11. PMID 32781986, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC00992 exerts oncogenic activities in prostate cancer via regulation of SOX4.
    Title: LINC00992 exerts oncogenic activities in prostate cancer via regulation of SOX4.
  2. LINC00992 contributes to the oncogenic phenotypes in prostate cancer via targeting miR-3935 and augmenting GOLM1 expression.
    Title: LINC00992 contributes to the oncogenic phenotypes in prostate cancer via targeting miR-3935 and augmenting GOLM1 expression.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTC-504A5.1
  • estrogen inducible lncRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046089.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027341, BC045192

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    117415512..117579744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    117928173..118092131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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