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SLIT3-AS1 SLIT3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 728095, updated on 17-Sep-2024

Summary

Official Symbol
SLIT3-AS1provided by HGNC
Official Full Name
SLIT3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40553
See related
AllianceGenome:HGNC:40553
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.3) See more
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Genomic context

See SLIT3-AS1 in Genome Data Viewer
Location:
5q35.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (169013227..169037998)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (169548909..169573677)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (168440232..168465003)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene slit guidance ligand 3 Neighboring gene uncharacterized LOC107986472 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16600 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:168411250-168411831 Neighboring gene uncharacterized LOC124901130 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:168433635-168434834 Neighboring gene uncharacterized LOC105377712 Neighboring gene NANOG hESC enhancer GRCh37_chr5:168554345-168554846 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:168568788-168568956 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:168590816-168591682 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:168591683-168592547 Neighboring gene microRNA 585

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109897.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR740037, DB028580

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    169013227..169037998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    169548909..169573677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)