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lgalsla lectin, galactoside-binding-like a [ Danio rerio (zebrafish) ]

Gene ID: 723995, updated on 2-Nov-2024

Summary

Official Symbol
lgalslaprovided by ZNC
Official Full Name
lectin, galactoside-binding-like aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060616-24
See related
Ensembl:ENSDARG00000059060 AllianceGenome:ZFIN:ZDB-GENE-060616-24
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
grp; lgalsl; zgc:136758
Summary
Predicted to enable carbohydrate binding activity. Orthologous to human LGALSL (galectin like). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See lgalsla in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (55080797..55090717)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (54403146..54413066)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene VPS54 subunit of GARP complex Neighboring gene pellino E3 ubiquitin protein ligase 1a Neighboring gene aftiphilin a Neighboring gene SERTA domain containing 2a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
galectin-related protein
Names
lectin galactoside-binding-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045300.1NP_001038765.1  galectin-related protein

    See identical proteins and their annotated locations for NP_001038765.1

    Status: PROVISIONAL

    Source sequence(s)
    BC117644
    UniProtKB/Swiss-Prot
    Q1ECW6
    Related
    ENSDARP00000071857.4, ENSDART00000077390.6
    Conserved Domains (1) summary
    smart00908
    Location:43164
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    55080797..55090717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)