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PICALM phosphatidylinositol binding clathrin assembly protein [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706003, updated on 17-Aug-2024

Summary

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Official Symbol
PICALMprovided by VGNC
Official Full Name
phosphatidylinositol binding clathrin assembly proteinprovided by VGNC
Primary source
VGNC:VGNC:75802
See related
Ensembl:ENSMMUG00000019618
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PICALM in Genome Data Viewer
Location:
chromosome: 14
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (79195481..79308678, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (78547052..78660117, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 2 Neighboring gene coiled-coil domain containing 83 Neighboring gene tricarboxylate transport protein, mitochondrial pseudogene Neighboring gene uncharacterized LOC114672368 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114672369 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-binding clathrin assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266499.1 → NP_001253428.1  phosphatidylinositol-binding clathrin assembly protein

    See identical proteins and their annotated locations for NP_001253428.1

    Status: PROVISIONAL

    Source sequence(s)
    JU477403
    UniProtKB/TrEMBL
    A0A1D5QDT7, F7B1Y0, H9ZE41
    Related
    ENSMMUP00000046206.2, ENSMMUT00000071341.2
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    79195481..79308678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015115303.2 → XP_014970789.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5QC04
    Related
    ENSMMUP00000078269.1, ENSMMUT00000097134.1
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  2. XM_015115321.2 → XP_014970807.1  phosphatidylinositol-binding clathrin assembly protein isoform X12

    UniProtKB/TrEMBL
    F7B1Y0, H9ZE43
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  3. XM_015115320.2 → XP_014970806.1  phosphatidylinositol-binding clathrin assembly protein isoform X11

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  4. XM_015115322.2 → XP_014970808.1  phosphatidylinositol-binding clathrin assembly protein isoform X13

    UniProtKB/TrEMBL
    F7B1Y0, H9G0D4
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  5. XM_015115318.2 → XP_014970804.1  phosphatidylinositol-binding clathrin assembly protein isoform X9

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  6. XM_015115323.2 → XP_014970809.1  phosphatidylinositol-binding clathrin assembly protein isoform X14

    UniProtKB/TrEMBL
    F7B1X1, F7B1Y0, H9G0D5
    Related
    ENSMMUP00000025766.4, ENSMMUT00000027550.4
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  7. XM_015115319.2 → XP_014970805.1  phosphatidylinositol-binding clathrin assembly protein isoform X10

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  8. XM_015115316.2 → XP_014970802.1  phosphatidylinositol-binding clathrin assembly protein isoform X8

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  9. XM_015115314.2 → XP_014970800.1  phosphatidylinositol-binding clathrin assembly protein isoform X7

    UniProtKB/TrEMBL
    F7B1Y0
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  10. XM_015115309.2 → XP_014970795.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  11. XM_015115313.2 → XP_014970799.1  phosphatidylinositol-binding clathrin assembly protein isoform X6

    UniProtKB/TrEMBL
    F7B1Y0
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  12. XM_015115304.2 → XP_014970790.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  13. XM_015115307.2 → XP_014970793.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

    UniProtKB/TrEMBL
    A0A1D5QC04
    Related
    ENSMMUP00000025768.4, ENSMMUT00000027552.4
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  14. XM_015115312.2 → XP_014970798.1  phosphatidylinositol-binding clathrin assembly protein isoform X5

    UniProtKB/TrEMBL
    F7B1Y0, H9G0D3
    Related
    ENSMMUP00000079960.1, ENSMMUT00000085971.1
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  15. XM_028832638.1 → XP_028688471.1  phosphatidylinositol-binding clathrin assembly protein isoform X15

    UniProtKB/TrEMBL
    A0A1D5QC04
    Conserved Domains (2) summary
    COG4223
    Location:135 → 233
    COG4223; Uncharacterized conserved protein [Function unknown]
    cl02544
    Location:20 → 149
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version

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