SP5 Sp5 transcription factor [Gallus gallus (chicken)] - Gene

Summary

Symbol: SP5provided by CGNC
Full Name: Sp5 transcription factorprovided by CGNC
Primary source: CGNC:27427
See related: Ensembl:ENSGALG00010023246
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	7	NC_052538.1 (17875766..17877663, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	7	NC_052579.1 (17795603..17797500, complement)

Chromosome 7 - NC_052538.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A regulatory sub-circuit downstream of Wnt signaling controls developmental transitions in neural crest formation.
Title: A regulatory sub-circuit downstream of Wnt signaling controls developmental transitions in neural crest formation.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcription factor Sp5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044684.2 → NP_001038149.1 transcription factor Sp5

See identical proteins and their annotated locations for NP_001038149.1

Status: PROVISIONAL

Source sequence(s)

JAENSK010000236

UniProtKB/TrEMBL

Q5R2J0

Related

ENSGALP00010034423.1, ENSGALT00010056681.1

Conserved Domains (4) summary

COG5048
Location:284 → 358

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:274 → 293

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:329 → 351

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:315 → 338

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

17875766..17877663 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

17795603..17797500 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)