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Pcnx4 pecanex 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690217, updated on 2-Nov-2024

Summary

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Official Symbol
Pcnx4provided by RGD
Official Full Name
pecanex 4provided by RGD
Primary source
RGD:1582892
See related
EnsemblRapid:ENSRNOG00000005568 AllianceGenome:RGD:1582892
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pcnxl4; RGD1566114
Summary
Predicted to be located in membrane. Orthologous to human PCNX4 (pecanex 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 141.1), Testes (RPKM 72.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Pcnx4 in Genome Data Viewer
Location:
6q24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (96860960..96906319)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (91125063..91170423)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (95314867..95452631) , (95353334..95360686)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 9 Neighboring gene uncharacterized LOC102549502 Neighboring gene dehydrogenase/reductase SDR family member 7-like Neighboring gene uncharacterized LOC134479287

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pecanex-like protein 4
Names
pecanex homolog 4
pecanex-like 4
pecanex-like protein C14orf135 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329383.1 → NP_001316312.1  pecanex-like protein 4

    Status: VALIDATED

    Source sequence(s)
    BC166574, JAXUCZ010000006
    UniProtKB/TrEMBL
    F1M711
    Related
    ENSRNOP00000007369.9, ENSRNOT00000007369.9
    Conserved Domains (1) summary
    pfam05041
    Location:1026 → 1172
    Pecanex_C; Pecanex protein (C-terminus)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    96860960..96906319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039112963.1 → XP_038968891.1  pecanex-like protein 4 isoform X1

    Conserved Domains (1) summary
    pfam05041
    Location:831 → 977
    Pecanex_C; Pecanex protein (C-terminus)
Nucleotide Protein Strain
Heading Accession and Version

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