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LOC655003 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [ Tribolium castaneum (red flour beetle) ]

Gene ID: 655003, updated on 12-Apr-2024

Summary

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Gene symbol
LOC655003
Gene description
U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Locus tag
TcasGA2_TC009054
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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See LOC655003 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (16781798..16782634)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (7988645..7989438, complement)

Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene adipokinetic hormone receptor Neighboring gene protein AATF Neighboring gene JIL-1 anchoring and stabilizing protein Neighboring gene abhydrolase domain-containing protein 2 Neighboring gene sidestep IV

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Names
AUGUSTUS-3.0.2_09054
GLEAN_09054
U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

    Range
    16781798..16782634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_961472.5 → XP_966565.1  U11/U12 small nuclear ribonucleoprotein 35 kDa protein

    See identical proteins and their annotated locations for XP_966565.1

    UniProtKB/TrEMBL
    D6WPL2
    Conserved Domains (2) summary
    COG0724
    Location:23 → 135
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12237
    Location:54 → 145
    RRM_snRNP35; RNA recognition motif found in U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12-35K) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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