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LSP1P4 LSP1 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 654342, updated on 10-Oct-2023

Summary

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Official Symbol
LSP1P4provided by HGNC
Official Full Name
LSP1 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:53915
See related
AllianceGenome:HGNC:53915
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 15.8), kidney (RPKM 9.3) and 23 other tissues See more
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Genomic context

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Location:
2p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (91636683..91659949, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (91826407..91849675, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (91824709..91847975, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MAPK-interacting and spindle-stabilizing protein-like Neighboring gene OCT4 hESC enhancer GRCh37_chr2:91744009-91744510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91762682-91763600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91763601-91764518 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:91782891-91783056 Neighboring gene otopetrin 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91800405-91800908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91814909-91815410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91815411-91815910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91815988-91816557 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820030-91820530 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820531-91821031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91846385-91847216 Neighboring gene RNA, 5S ribosomal pseudogene 100 Neighboring gene dopamine receptor D5 pseudogene 1 Neighboring gene lysine methyltransferase 2C pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human and mouse LSP1 genes code for highly conserved phosphoproteins. Jongstra-Bilen J, et al. J Immunol, 1990 Feb 1. PMID 2295815
  2. Expression of mouse LSP1/S37 isoforms. S37 is expressed in embryonic mesenchymal cells. Misener VL, et al. J Cell Sci, 1994 Dec. PMID 7706408
  3. Human lymphocyte-specific pp52 gene is a member of a highly conserved dispersed family. May W, et al. Genomics, 1993 Mar. PMID 8468046
  4. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027238.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BF031534, BM826054

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    91636683..91659949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    91826407..91849675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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