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LINC03007 long intergenic non-protein coding RNA 3007 [ Homo sapiens (human) ]

Gene ID: 646588, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03007provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3007provided by HGNC
Primary source
HGNC:HGNC:56132
See related
Ensembl:ENSG00000223561 AllianceGenome:HGNC:56132
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 4.3), endometrium (RPKM 0.4) and 4 other tissues See more
Orthologs
all
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Genomic context

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See LINC03007 in Genome Data Viewer
Location:
7p15.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (25593301..25790119, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (25728749..25925571, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (25632921..25829739, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375195 Neighboring gene uncharacterized LOC124901604 Neighboring gene uncharacterized LOC105375196 Neighboring gene VISTA enhancer hs1677 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:25560334-25561533 Neighboring gene MPRA-validated peak6444 silencer Neighboring gene VISTA enhancer hs1600 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:25728911-25729412 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25736154-25736771 Neighboring gene NANOG hESC enhancer GRCh37_chr7:25773276-25773786 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:25772342-25773008 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:25783555-25784148 Neighboring gene VISTA enhancer hs1325 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25869720-25870292 Neighboring gene uncharacterized LOC100506236 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25770 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18026 Neighboring gene VISTA enhancer hs1465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25771 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25772 Neighboring gene uncharacterized LOC105375199 Neighboring gene uncharacterized LOC105375200

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Homology

Clone Names

  • AC003090.1, AC005165.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_157808.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165, DA691079

  2. NR_157809.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165

  3. NR_157810.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
    Related
    ENST00000812178.1

  4. NR_157811.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
    Related
    ENST00000812186.1

  5. NR_157812.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
    Related
    ENST00000812185.1

  6. NR_157813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165

  7. NR_157814.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
    Related
    ENST00000456777.7

  8. NR_157815.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165

  9. NR_157816.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090, AC005165
    Related
    ENST00000812208.1

  10. NR_157818.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000656871.2

  11. NR_157819.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090

  12. NR_157820.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000652885.1

  13. NR_157821.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000661813.1

  14. NR_157822.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000660499.1

  15. NR_157823.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000653559.2

  16. NR_157824.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090

  17. NR_157825.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000658568.1

  18. NR_157826.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000654115.1

  19. NR_157827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000423689.3

  20. NR_157828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000656897.1

  21. NR_157829.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000446840.6

  22. NR_157830.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000668233.2

  23. NR_157831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003090
    Related
    ENST00000669861.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    25593301..25790119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    25728749..25925571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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