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MRM1 mitochondrial rRNA methyltransferase 1 [ Canis lupus familiaris (dog) ]

Gene ID: 610311, updated on 17-Aug-2024

Summary

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Official Symbol
MRM1provided by VGNC
Official Full Name
mitochondrial rRNA methyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:43366
See related
Ensembl:ENSCAFG00845029022
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See MRM1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (37284304..37290772)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (35700609..35707086)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (36441466..36447933)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (36066771..36073238)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (36353479..36357824)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene gametogenetin binding protein 2 Neighboring gene dehydrogenase/reductase 11 Neighboring gene uncharacterized LOC111097545 Neighboring gene uncharacterized LOC111097546

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA methyltransferase 1, mitochondrial
Names
mitochondrial rRNA methyltransferase 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    37284304..37290772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038677240.1 → XP_038533168.1  rRNA methyltransferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A8C0PZP5, A0A8I3Q638
    Related
    ENSCAFP00845040270.1, ENSCAFT00845051334.1
    Conserved Domains (2) summary
    cd18105
    Location:148 → 303
    SpoU-like_MRM1; SAM-dependent rRNA methylase related to MRM1
    pfam08032
    Location:81 → 129
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    36066771..36073238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038486208.1 → XP_038342136.1  rRNA methyltransferase 1, mitochondrial

    Conserved Domains (2) summary
    cd18105
    Location:148 → 303
    SpoU-like_MRM1; SAM-dependent rRNA methylase related to MRM1
    pfam08032
    Location:81 → 129
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    36353479..36357824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611994.1 → XP_038467922.1  rRNA methyltransferase 1, mitochondrial

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    36441466..36447933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038548026.1 → XP_038403954.1  rRNA methyltransferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A8C0RSE5, A0A8P0SLQ7

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35700609..35707086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847787.6 → XP_852880.3  rRNA methyltransferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A8C0RSE5, A0A8P0SLQ7
    Conserved Domains (3) summary
    COG0566
    Location:88 → 309
    SpoU; tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]
    pfam00588
    Location:150 → 301
    SpoU_methylase; SpoU rRNA Methylase family
    pfam08032
    Location:81 → 129
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding
Nucleotide Protein
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