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LAMP3 lysosomal associated membrane protein 3 [ Canis lupus familiaris (dog) ]

Gene ID: 607186, updated on 5-Mar-2024

Summary

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Gene symbol
LAMP3
Gene description
lysosomal associated membrane protein 3
See related
Ensembl:ENSCAFG00845021628
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LAMP3 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (15998428..16033717, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (20179722..20215048, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (16262916..16298199, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (16039288..16074827, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (16022905..16058209, complement)

Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106558213 Neighboring gene methylcrotonyl-CoA carboxylase subunit 1 Neighboring gene uncharacterized LOC111093955 Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosome-associated membrane glycoprotein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051838.1 Reference ROS_Cfam_1.0

    Range
    15998428..16033717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445664.1 → XP_038301592.1  lysosome-associated membrane glycoprotein 3

    UniProtKB/TrEMBL
    A0A8C0JL22
    Related
    ENSCAFP00845029940.1, ENSCAFT00845038222.1
    Conserved Domains (2) summary
    PHA03247
    Location:84 → 237
    PHA03247; large tegument protein UL36; Provisional
    pfam01299
    Location:235 → 378
    Lamp; Lysosome-associated membrane glycoprotein (Lamp)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049294.1 Alternate UMICH_Zoey_3.1

    Range
    16039288..16074827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519851.1 → XP_038375779.1  lysosome-associated membrane glycoprotein 3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

    Range
    16022905..16058209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647899.1 → XP_038503827.1  lysosome-associated membrane glycoprotein 3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

    Range
    16262916..16298199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583490.1 → XP_038439418.1  lysosome-associated membrane glycoprotein 3

    UniProtKB/TrEMBL
    A0A8C0JL22

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    20179722..20215048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_843796.5 → XP_848889.2  lysosome-associated membrane glycoprotein 3

    UniProtKB/TrEMBL
    A0A8C0JL22
    Conserved Domains (2) summary
    PHA03247
    Location:84 → 237
    PHA03247; large tegument protein UL36; Provisional
    pfam01299
    Location:235 → 378
    Lamp; Lysosome-associated membrane glycoprotein (Lamp)
Nucleotide Protein
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