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DOCK6 dedicator of cytokinesis 6 [ Homo sapiens (human) ]

Gene ID: 57572, updated on 3-Nov-2024

Summary

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Official Symbol
DOCK6provided by HGNC
Official Full Name
dedicator of cytokinesis 6provided by HGNC
Primary source
HGNC:HGNC:19189
See related
Ensembl:ENSG00000130158 MIM:614194; AllianceGenome:HGNC:19189
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AOS2; ZIR1
Summary
This gene encodes a member of the dedicator of cytokinesis (DOCK) family of atypical guanine nucleotide exchange factors. Guanine nucleotide exchange factors interact with small GTPases and are components of intracellular signaling networks. The encoded protein is a group C DOCK protein and plays a role in actin cytoskeletal reorganization by activating the Rho GTPases Cdc42 and Rac1. Mutations in this gene are associated with Adams-Oliver syndrome 2. [provided by RefSeq, Dec 2011]
Expression
Ubiquitous expression in fat (RPKM 16.5), lung (RPKM 12.6) and 24 other tissues See more
Orthologs
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Genomic context

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See DOCK6 in Genome Data Viewer
Location:
19p13.2
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (11199295..11262524, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (11326296..11389499, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11309971..11373200, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10101 Neighboring gene SPC24 component of NDC80 kinetochore complex Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11276922-11277422 Neighboring gene KN motif and ankyrin repeat domains 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11300095-11300596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11300597-11301096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10103 Neighboring gene DOCK6 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11347000-11347810 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11347811-11348621 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11354157-11354967 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11363424-11364392 Neighboring gene angiopoietin like 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11364393-11365361 Neighboring gene Sharpr-MPRA regulatory region 11176 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:11367378-11367534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10105 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10106 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:11408869-11409370 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:11409371-11409870 Neighboring gene tetraspanin 16 Neighboring gene uncharacterized HSPC102 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14008 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10107 Neighboring gene RAB3D, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Cell-Intrinsic Adaptation Arising from Chronic Ablation of a Key Rho GTPase Regulator. Cerikan B, et al. Dev Cell, 2016 Oct 10. PMID 27693507
  2. Novel compound heterozygous mutations of the DOCK6 gene in a familial case of Adams-Oliver syndrome 2. Wang Z, et al. Gene, 2019 Jun 5. PMID 30898718
  3. Recessive mutations in DOCK6, encoding the guanidine nucleotide exchange factor DOCK6, lead to abnormal actin cytoskeleton organization and Adams-Oliver syndrome. Shaheen R, et al. Am J Hum Genet, 2011 Aug 12. PMID 21820096, Free PMC Article
  4. DOCK6 mutations are responsible for a distinct autosomal-recessive variant of Adams-Oliver syndrome associated with brain and eye anomalies. Sukalo M, et al. Hum Mutat, 2015 Jun. PMID 25824905
  5. miR-142-3p Is a Regulator of the TGFβ-Mediated Vascular Smooth Muscle Cell Phenotype. Kim K, et al. J Cell Biochem, 2015 Oct. PMID 25832008

See all (55) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Associations of ANGPTL6, DOCK6, FABP1, and PCSK9 single-nucleotide variants with hypercholesterolemia in the Polish population: a cross-sectional study.
    Title: Associations of ANGPTL6, DOCK6, FABP1, and PCSK9 single-nucleotide variants with hypercholesterolemia in the Polish population: a cross-sectional study.
  2. Attenuated clinical and osteoclastic phenotypes of Paget's disease of bone linked to the p.Pro392Leu/SQSTM1 mutation by a rare variant in the DOCK6 gene.
    Title: Attenuated clinical and osteoclastic phenotypes of Paget's disease of bone linked to the p.Pro392Leu/SQSTM1 mutation by a rare variant in the DOCK6 gene.
  3. Overexpression of DOCK6 in oral squamous cell cancer promotes cellular migration and invasion and is associated with poor prognosis.
    Title: Overexpression of DOCK6 in oral squamous cell cancer promotes cellular migration and invasion and is associated with poor prognosis.
  4. Expanding the phenotype in Adams-Oliver syndrome correlating with the genotype.
    Title: Expanding the phenotype in Adams-Oliver syndrome correlating with the genotype.
  5. DOCK6 localizes to the endoplasmic reticulum (ER) in dependence of its DHR-1 domain.
    Title: Mechanism of cell-intrinsic adaptation to Adams-Oliver Syndrome gene DOCK6 disruption highlights ubiquitin-like modifier ISG15 as a regulator of RHO GTPases.
  6. Results identified c.4106rC and c.3063 C>G mutations in the DOCK6 gene in a 5-year-old Chinese girl with the phenotype of Adams-Oliver syndrome (AOS). When caused by mutations in the DOCK6 gene, the AOS inheritance pattern is autosomal recessive. The two mutations carried by the patient were inherited from the father and mother respectively, generating compound heterozygosity in the patient.
    Title: Novel compound heterozygous mutations of the DOCK6 gene in a familial case of Adams-Oliver syndrome 2.
  7. Dock6 was over-expressed in GC tissues, and its positive expression was associated with GC metastasis and indicated poor prognosis of GC patients.
    Title: miR-148b-3p inhibits gastric cancer metastasis by inhibiting the Dock6/Rac1/Cdc42 axis.
  8. acute knockdown of the Adams-Oliver syndrome (AOS) gene DOCK6, coding for a RAC1/CDC42 guanine nucleotide exchange factor, results in strikingly different phenotypes to those generated by genomic DOCK6 disruption.
    Title: Cell-Intrinsic Adaptation Arising from Chronic Ablation of a Key Rho GTPase Regulator.
  9. this study demonstrates that miR-142-3p is a key regulator of the TGFbeta-mediated contractile phenotype of VSMCs that acts through inhibiting cell migration through targeting DOCK6.
    Title: miR-142-3p Is a Regulator of the TGFβ-Mediated Vascular Smooth Muscle Cell Phenotype.
  10. DOCK6 mutations are responsible for a distinct autosomal-recessive variant of Adams-Oliver syndrome associated with brain and eye anomalies
    Title: DOCK6 mutations are responsible for a distinct autosomal-recessive variant of Adams-Oliver syndrome associated with brain and eye anomalies.
Submit: New GeneRIF Correction See all GeneRIFs (11)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Adams-Oliver syndrome 2
MedGen: C3280182 OMIM: 614219 GeneReviews: Not available
Compare labs

EBI GWAS Catalog

Description
A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.
EBI GWAS Catalog
Biological, clinical and population relevance of 95 loci for blood lipids.
EBI GWAS Catalog
Discovery and refinement of loci associated with lipid levels.
EBI GWAS Catalog
Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
EBI GWAS Catalog
Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.
EBI GWAS Catalog
Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Rho protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dedicator of cytokinesis protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_031953.1 RefSeqGene

    Range
    4969..68198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001367830.1 → NP_001354759.1  dedicator of cytokinesis protein 6 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC009000, AC011472
    Consensus CDS
    CCDS92518.1
    UniProtKB/TrEMBL
    A0A2X0TVX1, K7ESB7
    Related
    ENSP00000468638.2, ENST00000587656.6

  2. NM_020812.4 → NP_065863.2  dedicator of cytokinesis protein 6 isoform 1

    See identical proteins and their annotated locations for NP_065863.2

    Status: REVIEWED

    Source sequence(s)
    AB037816, AC011472, AK316063, BC008335, CV571923, CX759906, DC333132
    Consensus CDS
    CCDS45975.1
    UniProtKB/Swiss-Prot
    A6H8X5, Q7Z7P4, Q96HP0, Q9P2F2
    UniProtKB/TrEMBL
    A0A2X0TVX1
    Related
    ENSP00000294618.6, ENST00000294618.12
    Conserved Domains (3) summary
    cd08696
    Location:547 → 724
    C2_Dock-C; C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins
    cd11702
    Location:1592 → 2014
    DHR2_DOCK6; Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6
    pfam11878
    Location:65 → 155
    DUF3398; Domain of unknown function (DUF3398)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    11199295..11262524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047439124.1 → XP_047295080.1  dedicator of cytokinesis protein 6 isoform X3

  2. XM_005260000.3 → XP_005260057.1  dedicator of cytokinesis protein 6 isoform X9

    UniProtKB/TrEMBL
    A0A2X0TVX1
    Conserved Domains (3) summary
    cd08696
    Location:547 → 724
    C2_Dock-C; C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins
    cd11702
    Location:1658 → 2080
    DHR2_DOCK6; Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6
    pfam11878
    Location:65 → 155
    DUF3398; Domain of unknown function (DUF3398)

  3. XM_011528152.2 → XP_011526454.1  dedicator of cytokinesis protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A2X0TVX1
    Conserved Domains (3) summary
    cd08696
    Location:558 → 735
    C2_Dock-C; C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins
    cd11702
    Location:1603 → 2025
    DHR2_DOCK6; Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6
    pfam11878
    Location:65 → 155
    DUF3398; Domain of unknown function (DUF3398)

  4. XM_011528151.2 → XP_011526453.1  dedicator of cytokinesis protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A2X0TVX1
    Conserved Domains (3) summary
    cd08696
    Location:558 → 735
    C2_Dock-C; C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins
    cd11702
    Location:1634 → 2056
    DHR2_DOCK6; Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6
    pfam11878
    Location:65 → 155
    DUF3398; Domain of unknown function (DUF3398)

  5. XM_011528150.2 → XP_011526452.1  dedicator of cytokinesis protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2X0TVX1
    Conserved Domains (3) summary
    cd08696
    Location:558 → 735
    C2_Dock-C; C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins
    cd11702
    Location:1638 → 2060
    DHR2_DOCK6; Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6
    pfam11878
    Location:65 → 155
    DUF3398; Domain of unknown function (DUF3398)

  6. XM_006722804.4 → XP_006722867.1  dedicator of cytokinesis protein 6 isoform X5

    UniProtKB/TrEMBL
    B4DIL4
    Conserved Domains (1) summary
    cd11702
    Location:704 → 1126
    DHR2_DOCK6; Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6

  7. XM_047439125.1 → XP_047295081.1  dedicator of cytokinesis protein 6 isoform X6

  8. XM_047439127.1 → XP_047295083.1  dedicator of cytokinesis protein 6 isoform X8

  9. XM_047439126.1 → XP_047295082.1  dedicator of cytokinesis protein 6 isoform X7

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    11326296..11389499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054321534.1 → XP_054177509.1  dedicator of cytokinesis protein 6 isoform X3

  2. XM_054321540.1 → XP_054177515.1  dedicator of cytokinesis protein 6 isoform X9

  3. XM_054321535.1 → XP_054177510.1  dedicator of cytokinesis protein 6 isoform X4

  4. XM_054321533.1 → XP_054177508.1  dedicator of cytokinesis protein 6 isoform X2

  5. XM_054321532.1 → XP_054177507.1  dedicator of cytokinesis protein 6 isoform X1

  6. XM_054321536.1 → XP_054177511.1  dedicator of cytokinesis protein 6 isoform X5

  7. XM_054321537.1 → XP_054177512.1  dedicator of cytokinesis protein 6 isoform X6

  8. XM_054321539.1 → XP_054177514.1  dedicator of cytokinesis protein 6 isoform X8

  9. XM_054321538.1 → XP_054177513.1  dedicator of cytokinesis protein 6 isoform X7

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96HP0.3 GenPept UniProtKB/Swiss-Prot:Q96HP0

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