spns3 SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: spns3provided by ZNC
Official Full Name: SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)provided by ZNC
Primary source: ZFIN:ZDB-GENE-060531-7
See related: Ensembl:ENSDARG00000035459 AllianceGenome:ZFIN:ZDB-GENE-060531-7
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: spinl3; si:ch211-117m20.8
Summary: Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within lipid transport and transmembrane transport. Predicted to be active in membrane. Orthologous to human SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (30958477..30984010, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (30358317..30383870, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within lipid transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein spinster homolog 3

Names: spinster homolog 3; spinster-like 3; spinster-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100036.1 → NP_001093506.1 protein spinster homolog 3

See identical proteins and their annotated locations for NP_001093506.1

Status: VALIDATED

Source sequence(s)

CR753844, DQ360112, EB966075

UniProtKB/Swiss-Prot

A2CER7, A2SWM3

Related

ENSDARP00000145247.1, ENSDART00000182367.1

Conserved Domains (2) summary

cd06174
Location:51 → 432

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

pfam07690
Location:54 → 414

MFS_1; Major Facilitator Superfamily