zbtb10 zinc finger and BTB domain containing 10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zbtb10provided by ZNC
Official Full Name: zinc finger and BTB domain containing 10provided by ZNC
Primary source: ZFIN:ZDB-GENE-030429-10
See related: Ensembl:ENSDARG00000077101 AllianceGenome:ZFIN:ZDB-GENE-030429-10
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb299; si:dkeyp-34f6.1
Summary: Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including anterior axial hypoblast; forerunner cell group; nervous system; neural tube; and presumptive telencephalon. Orthologous to human ZBTB10 (zinc finger and BTB domain containing 10). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (31878905..31900893, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (32291592..32313580, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger and BTB domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128539.1 → NP_001122011.1 zinc finger and BTB domain-containing protein 10

Status: PROVISIONAL

Source sequence(s)

BX322551

UniProtKB/TrEMBL

A0A8M1NHI8, A5PMB0

Related

ENSDARP00000097547.4, ENSDART00000113797.5

Conserved Domains (5) summary

smart00225
Location:158 → 254

BTB; Broad-Complex, Tramtrack and Bric a brac

sd00017
Location:435 → 455

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00651
Location:147 → 253

BTB; BTB/POZ domain

pfam13465
Location:448 → 472

zf-H2C2_2; Zinc-finger double domain

pfam13909
Location:433 → 457

zf-H2C2_5; C2H2-type zinc-finger domain