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caln1 calneuron 1 [ Danio rerio (zebrafish) ]

Gene ID: 562420, updated on 12-Sep-2024

Summary

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Official Symbol
caln1provided by ZNC
Official Full Name
calneuron 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-130313-1
See related
Ensembl:ENSDARG00000088898 AllianceGenome:ZFIN:ZDB-GENE-130313-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkeyp-108d9.1
Summary
Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; pronephric duct; retinal ganglion cell layer; and spinal cord. Orthologous to human CALN1 (calneuron 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See caln1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (16559061..16704362, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (16628693..16768362, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene polypeptide N-acetylgalactosaminyltransferase 17 Neighboring gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Neighboring gene uncharacterized LOC137487736 Neighboring gene transmembrane protein 120Ab

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Naoxintong restores ischemia injury and inhibits thrombosis via COX2-VEGF/ NFκB signaling. Wang Z, et al. J Ethnopharmacol, 2021 Apr 24. PMID 33444716
  2. Characterization of the calcium binding protein family in zebrafish. Di Donato V, et al. PLoS One, 2013. PMID 23341937, Free PMC Article
  3. The lasting after-effects of an ancient polyploidy on the genomes of teleosts. Conant GC. PLoS One, 2020. PMID 32298330, Free PMC Article
  4. A spinal organ of proprioception for integrated motor action feedback. Picton LD, et al. Neuron, 2021 Apr 7. PMID 33577748
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
calcium-binding protein 8
Names
cabp8a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    16559061..16704362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_685807.7 → XP_690899.2  calcium-binding protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8N7T775, X1WE84
    Related
    ENSDARP00000128535.1, ENSDART00000155163.2
    Conserved Domains (1) summary
    PTZ00184
    Location:32 → 142
    PTZ00184; calmodulin; Provisional

  2. XM_021466346.2 → XP_021322021.1  calcium-binding protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PIG6
    Conserved Domains (1) summary
    cl25352
    Location:75 → 185
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein Strain
Heading Accession and Version

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