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klhl38a kelch-like family member 38a [ Danio rerio (zebrafish) ]

Gene ID: 559083, updated on 2-Nov-2024

Summary

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Official Symbol
klhl38aprovided by ZNC
Official Full Name
kelch-like family member 38aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-737
See related
Ensembl:ENSDARG00000031383 AllianceGenome:ZFIN:ZDB-GENE-060503-737
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
klhl38; si:dkey-5e12.1
Summary
Orthologous to human KLHL38 (kelch like family member 38). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See klhl38a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (33082790..33088841, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (33495959..33505419, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch211-215i13.3 Neighboring gene spire-type actin nucleation factor 1a Neighboring gene family with sequence similarity 91 member A1 Neighboring gene LRAT domain containing 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Saltatory evolution of the ectodermal neural cortex gene family at the vertebrate origin. Feiner N, et al. Genome Biol Evol, 2013. PMID 23843192, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
kelch-like protein 38
Names
kelch-like 38
kelch-like 38a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044885.1 → NP_001038350.1  kelch-like protein 38

    See identical proteins and their annotated locations for NP_001038350.1

    Status: PROVISIONAL

    Source sequence(s)
    BX004966
    UniProtKB/Swiss-Prot
    Q1LYM6
    UniProtKB/TrEMBL
    B7ZVP8
    Related
    ENSDARP00000052077.4, ENSDART00000052078.5
    Conserved Domains (3) summary
    sd00038
    Location:375 → 419
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:512 → 562
    Kelch_1; Kelch motif
    cl28614
    Location:31 → 524
    BTB; Broad-Complex, Tramtrack and Bric a brac

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    33082790..33088841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468086.2 → XP_021323761.1  kelch-like protein 38 isoform X1

    UniProtKB/Swiss-Prot
    Q1LYM6
    UniProtKB/TrEMBL
    B7ZVP8
    Conserved Domains (3) summary
    sd00038
    Location:375 → 419
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:512 → 562
    Kelch_1; Kelch motif
    cl28614
    Location:31 → 524
    BTB; Broad-Complex, Tramtrack and Bric a brac

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395056.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    227524..230704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1LYM6.1 GenPept UniProtKB/Swiss-Prot:Q1LYM6

Gene LinkOut

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