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acp6 acid phosphatase 6, lysophosphatidic [ Danio rerio (zebrafish) ]

Gene ID: 558758, updated on 2-Nov-2024

Summary

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Official Symbol
acp6provided by ZNC
Official Full Name
acid phosphatase 6, lysophosphatidicprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-290
See related
Ensembl:ENSDARG00000040064 AllianceGenome:ZFIN:ZDB-GENE-050208-290
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7147584; zgc:172268
Summary
Predicted to enable lysophosphatidic acid phosphatase activity. Predicted to be involved in lysobisphosphatidic acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ACP6 (acid phosphatase 6, lysophosphatidic). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See acp6 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (30478768..30490414)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (30668022..30679668)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene gap junction protein alpha 8 paralog a Neighboring gene gap junction protein, alpha 5a Neighboring gene si:dkey-229b18.3 Neighboring gene E3 SUMO-protein ligase ZBED1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of p53-target genes in Danio rerio. Mandriani B, et al. Sci Rep, 2016 Sep 1. PMID 27581768, Free PMC Article
  2. An Adenosine Receptor for Olfaction in Fish. Wakisaka N, et al. Curr Biol, 2017 May 22. PMID 28502661
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables lysophosphatidic acid phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in lysobisphosphatidic acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
lysophosphatidic acid phosphatase type 6
NP_001103850.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110380.1 → NP_001103850.1  lysophosphatidic acid phosphatase type 6

    See identical proteins and their annotated locations for NP_001103850.1

    Status: PROVISIONAL

    Source sequence(s)
    BC154624
    UniProtKB/TrEMBL
    A0A8M1NGC6, A8WG92
    Related
    ENSDARP00000091872.3, ENSDART00000101097.4
    Conserved Domains (1) summary
    cd07061
    Location:30 → 358
    HP_HAP_like; Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    30478768..30490414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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