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ssbp2a single stranded DNA binding protein 2a [ Danio rerio (zebrafish) ]

Gene ID: 558547, updated on 2-Nov-2024

Summary

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Official Symbol
ssbp2aprovided by ZNC
Official Full Name
single stranded DNA binding protein 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060531-14
See related
Ensembl:ENSDARG00000057395 AllianceGenome:ZFIN:ZDB-GENE-060531-14
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-130m23.3
Summary
Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ssbp2a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (46203524..46274019, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (45605746..45673962, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene IQ motif containing GTPase activating protein 2 Neighboring gene coagulation factor II (thrombin) receptor-like 2 Neighboring gene coagulation factor II (thrombin) receptor Neighboring gene si:ch211-130m23.2 Neighboring gene zgc:110626

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Shutdown corner, a large deletion mutant isolated from a haploid mutagenesis screen in zebrafish. Casey MA, et al. G3 (Bethesda), 2022 Mar 4. PMID 35079792, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC558547

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110378.1 → NP_001103848.1  uncharacterized protein LOC558547

    See identical proteins and their annotated locations for NP_001103848.1

    Status: PREDICTED

    Source sequence(s)
    BC154548
    UniProtKB/TrEMBL
    A2BIP9, A8WG20
    Related
    ENSDARP00000074483.4, ENSDART00000080033.5
    Conserved Domains (2) summary
    smart00667
    Location:16 → 42
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:80 → 327
    SSDP; Single-stranded DNA binding protein, SSDP

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    46203524..46274019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017356103.3 → XP_017211592.1  uncharacterized protein LOC558547 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z6W7

  2. XM_009301738.4 → XP_009300013.1  uncharacterized protein LOC558547 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B9V2
    Conserved Domains (2) summary
    smart00667
    Location:16 → 42
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:80 → 328
    SSDP; Single-stranded DNA binding protein, SSDP
Nucleotide Protein
Heading Accession and Version

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