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tsnax translin-associated factor X [ Danio rerio (zebrafish) ]

Gene ID: 556657, updated on 2-Nov-2024

Summary

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Official Symbol
tsnaxprovided by ZNC
Official Full Name
translin-associated factor Xprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050913-80
See related
Ensembl:ENSDARG00000115282 AllianceGenome:ZFIN:ZDB-GENE-050913-80
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:114078
Summary
Predicted to enable RNA binding activity and RNA endonuclease activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human TSNAX (translin associated factor X). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See tsnax in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (49153763..49169625, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (48863085..48878867, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene signal induced proliferation associated 1 like 2 Neighboring gene DISC1 scaffold protein Neighboring gene egl-9 family hypoxia-inducible factor 1a Neighboring gene uncharacterized LOC103912043

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC114078

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
translin-associated protein X

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030104.1 → NP_001025275.1  translin-associated protein X

    See identical proteins and their annotated locations for NP_001025275.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097140
    UniProtKB/TrEMBL
    Q4V8Z1
    Related
    ENSDARP00000151995.1, ENSDART00000192076.1
    Conserved Domains (1) summary
    pfam01997
    Location:47 → 255
    Translin; Translin family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    49153763..49169625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480590.2 → XP_021336265.1  translin-associated protein X isoform X1

    UniProtKB/TrEMBL
    A0A8M9QNE6
    Conserved Domains (1) summary
    pfam01997
    Location:31 → 209
    Translin; Translin family
Nucleotide Protein Strain
Heading Accession and Version

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