zbtb47a zinc finger and BTB domain containing 47a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zbtb47aprovided by ZNC
Official Full Name: zinc finger and BTB domain containing 47aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-081104-121
See related: Ensembl:ENSDARG00000057751 AllianceGenome:ZFIN:ZDB-GENE-081104-121
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-145c23.4
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to human ZBTB47 (zinc finger and BTB domain containing 47). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (21309699..21321570)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (21651230..21663024)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

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The following sections contain reference sequences that belong to a specific genome build. Explain

XM_678867.10 → XP_683959.6 zinc finger and BTB domain-containing protein 47 isoform X1

UniProtKB/TrEMBL

A0A8N7TAL0

Related

ENSDARP00000122576.2, ENSDART00000141322.4

Conserved Domains (4) summary

smart00225
Location:46 → 141

BTB; Broad-Complex, Tramtrack and Bric a brac

sd00017
Location:491 → 511

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00651
Location:32 → 137

BTB; BTB/POZ domain

pfam13465
Location:559 → 582

zf-H2C2_2; Zinc-finger double domain
XM_068213862.1 → XP_068069963.1 zinc finger and BTB domain-containing protein 47 isoform X2