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prickle1 prickle planar cell polarity protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549693, updated on 17-Aug-2024

Summary

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Official Symbol
prickle1provided by Xenbase
Official Full Name
prickle planar cell polarity protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-486941
See related
Ensembl:ENSXETG00000006797
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
pk; XPk; rilp; XPk-1; prickle; Prickle-b; prickle1-a; prickle1-b
Orthologs
human mouse all
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Genomic context

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See prickle1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (64723018..64778005)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (55174000..55229152)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 4 Neighboring gene pseudouridine synthase 7 like Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 20 Neighboring gene periphilin 1 Neighboring gene zinc finger CCHC-type and RNA binding motif containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anterior/posterior axis specification ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within convergent extension involved in gastrulation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within establishment of planar polarity ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within gastrulation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
prickle-like protein 1
Names
prickle A
prickle B
prickle homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016939.1 → NP_001016939.1  prickle-like protein 1

    See identical proteins and their annotated locations for NP_001016939.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761986
    UniProtKB/Swiss-Prot
    Q28FG2
    Related
    ENSXETP00000014840.2, ENSXETT00000014840.4
    Conserved Domains (4) summary
    cd09415
    Location:126 → 184
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:189 → 244
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:249 → 307
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:22 → 118
    PET_Prickle; The PET domain of Prickle

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    64723018..64778005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897950.1 → XP_031753810.1  prickle-like protein 1 isoform X2

    UniProtKB/TrEMBL
    B4F6K1, F7CD23
    Conserved Domains (4) summary
    cd09415
    Location:126 → 184
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:189 → 244
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:249 → 307
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:22 → 118
    PET_Prickle; The PET domain of Prickle

  2. XM_012959068.3 → XP_012814522.1  prickle-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QKU1
    Related
    ENSXETP00000070223.1, ENSXETT00000093328.2
    Conserved Domains (4) summary
    cd09415
    Location:164 → 222
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:227 → 282
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:287 → 345
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:60 → 156
    PET_Prickle; The PET domain of Prickle
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28FG2.1 GenPept UniProtKB/Swiss-Prot:Q28FG2

Gene LinkOut

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