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zbtb2 zinc finger and BTB domain containing 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549422, updated on 4-Nov-2024

Summary

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Official Symbol
zbtb2provided by Xenbase
Official Full Name
zinc finger and BTB domain containing 2provided by Xenbase
Primary source
Xenbase:XB-GENE-977864
See related
AllianceGenome:Xenbase:XB-GENE-977864
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
znf437
Summary
Predicted to be located in nucleus. Is expressed in ectoderm; musculoskeletal system; nervous system; and pharyngeal arch. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbtb2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (48950984..48961543)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (37707391..37718498)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene estrogen receptor 1 Neighboring gene coiled-coil domain containing 170 Neighboring gene syntaxin binding protein 5 (tomosyn) Neighboring gene androglobin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016668.2 → NP_001016668.1  zinc finger and BTB domain-containing protein 2

    See identical proteins and their annotated locations for NP_001016668.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760276
    UniProtKB/TrEMBL
    A0A803JEE3, F7BN89, Q28IQ5
    Conserved Domains (5) summary
    smart00355
    Location:254 → 276
    ZnF_C2H2; zinc finger
    sd00017
    Location:366 → 386
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:364 → 386
    zf-C2H2; Zinc finger, C2H2 type
    cd18193
    Location:3 → 117
    BTB_POZ_ZBTB2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 2 (ZBTB2)
    pfam13465
    Location:378 → 400
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    48950984..48961543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012963016.3 → XP_012818470.1  zinc finger and BTB domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012818470.1

    UniProtKB/TrEMBL
    A0A803JEE3, F7BN89, Q28IQ5
    Conserved Domains (5) summary
    smart00355
    Location:254 → 276
    ZnF_C2H2; zinc finger
    sd00017
    Location:366 → 386
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:364 → 386
    zf-C2H2; Zinc finger, C2H2 type
    cd18193
    Location:3 → 117
    BTB_POZ_ZBTB2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 2 (ZBTB2)
    pfam13465
    Location:378 → 400
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012963015.3 → XP_012818469.1  zinc finger and BTB domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012818469.1

    UniProtKB/TrEMBL
    A0A803JEE3, F7BN89, Q28IQ5
    Conserved Domains (5) summary
    smart00355
    Location:254 → 276
    ZnF_C2H2; zinc finger
    sd00017
    Location:366 → 386
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:364 → 386
    zf-C2H2; Zinc finger, C2H2 type
    cd18193
    Location:3 → 117
    BTB_POZ_ZBTB2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 2 (ZBTB2)
    pfam13465
    Location:378 → 400
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012963014.3 → XP_012818468.1  zinc finger and BTB domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012818468.1

    UniProtKB/TrEMBL
    A0A803JEE3, F7BN89, Q28IQ5
    Conserved Domains (5) summary
    smart00355
    Location:254 → 276
    ZnF_C2H2; zinc finger
    sd00017
    Location:366 → 386
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:364 → 386
    zf-C2H2; Zinc finger, C2H2 type
    cd18193
    Location:3 → 117
    BTB_POZ_ZBTB2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 2 (ZBTB2)
    pfam13465
    Location:378 → 400
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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