U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hmgn3 high mobility group nucleosomal binding domain 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549130, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
hmgn3provided by Xenbase
Official Full Name
high mobility group nucleosomal binding domain 3provided by Xenbase
Primary source
Xenbase:XB-GENE-482143
See related
Ensembl:ENSXETG00000025850 AllianceGenome:Xenbase:XB-GENE-482143
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
trip7; hmgn3-a; hmgn3-b; pnas-24; pnas-25
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hmgn3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (89791502..89800639)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (79339729..79348726, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene SH3 domain binding glutamate-rich protein like 2 Neighboring gene LCA5, lebercilin Neighboring gene pleckstrin homology domain interacting protein Neighboring gene meiosis-specific 4 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC64252

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in chromatin IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
high mobility group nucleosome-binding domain-containing protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016376.2 → NP_001016376.1  high mobility group nucleosome-binding domain-containing protein 3

    See identical proteins and their annotated locations for NP_001016376.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761250
    UniProtKB/TrEMBL
    Q28GS1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    89791502..89800639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962994.3 → XP_012818448.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PN05, A0A8J0SNT8
    Related
    ENSXETP00000057640.4, ENSXETT00000057640.4
    Conserved Domains (1) summary
    pfam01101
    Location:1 → 96
    HMG14_17; HMG14 and HMG17

  2. XM_012962995.3 → XP_012818449.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A6I8PJ20
    Related
    ENSXETP00000054867.3, ENSXETT00000054867.4
    Conserved Domains (1) summary
    pfam01101
    Location:1 → 95
    HMG14_17; HMG14 and HMG17
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.