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kifc3 kinesin family member C3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548839, updated on 17-Aug-2024

Summary

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Official Symbol
kifc3provided by Xenbase
Official Full Name
kinesin family member C3provided by Xenbase
Primary source
Xenbase:XB-GENE-980351
See related
Ensembl:ENSXETG00000013755
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See kifc3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (76019356..76050832)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (27976225..28007104)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene sperm microtubule inner protein 8 Neighboring gene cyclic nucleotide gated channel beta 1 Neighboring gene katanin regulatory subunit B1 Neighboring gene dynein regulatory complex subunit 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables cytoskeletal motor activity IEA
Inferred from Electronic Annotation
more info
  
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule-based movement IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kinesin-like protein KIFC3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197199.1 → NP_001184128.1  kinesin-like protein KIFC3

    See identical proteins and their annotated locations for NP_001184128.1

    Status: VALIDATED

    Source sequence(s)
    AAMC04000004, BC127342, DT450235
    UniProtKB/TrEMBL
    A0A6I8R0K0, A0A8J0SK34
    Related
    ENSXETP00000030134.5, ENSXETT00000030134.5
    Conserved Domains (2) summary
    COG1196
    Location:83 → 456
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl22853
    Location:483 → 810
    Motor_domain; Myosin and Kinesin motor domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    76019356..76050832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012961046.2 → XP_012816500.1  kinesin-like protein KIFC3 isoform X2

    See identical proteins and their annotated locations for XP_012816500.1

    UniProtKB/TrEMBL
    A0A6I8R0K0, A0A8J0SK34
    Conserved Domains (2) summary
    COG1196
    Location:83 → 456
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl22853
    Location:483 → 810
    Motor_domain; Myosin and Kinesin motor domain

  2. XM_012961045.3 → XP_012816499.1  kinesin-like protein KIFC3 isoform X2

    See identical proteins and their annotated locations for XP_012816499.1

    UniProtKB/TrEMBL
    A0A6I8R0K0, A0A8J0SK34
    Conserved Domains (2) summary
    COG1196
    Location:83 → 456
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl22853
    Location:483 → 810
    Motor_domain; Myosin and Kinesin motor domain

  3. XM_012961047.3 → XP_012816501.1  kinesin-like protein KIFC3 isoform X2

    See identical proteins and their annotated locations for XP_012816501.1

    UniProtKB/TrEMBL
    A0A6I8R0K0, A0A8J0SK34
    Related
    ENSXETP00000075415.2, ENSXETT00000074413.2
    Conserved Domains (2) summary
    COG1196
    Location:83 → 456
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl22853
    Location:483 → 810
    Motor_domain; Myosin and Kinesin motor domain

  4. XM_012961044.3 → XP_012816498.1  kinesin-like protein KIFC3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RAE4, A0A6I8SIK0
    Related
    ENSXETP00000092091.1, ENSXETT00000070845.2
    Conserved Domains (4) summary
    smart00129
    Location:552 → 881
    KISc; Kinesin motor, catalytic domain. ATPase
    cd01366
    Location:550 → 877
    KISc_C_terminal; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins
    pfam10473
    Location:213 → 323
    CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
    pfam15272
    Location:182 → 307
    BBP1_C; Spindle pole body component BBP1, C-terminal

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001016085.2: Suppressed sequence

    Description
    NM_001016085.2: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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