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spag6 sperm associated antigen 6 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548730, updated on 4-Nov-2024

Summary

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Official Symbol
spag6provided by Xenbase
Official Full Name
sperm associated antigen 6provided by Xenbase
Primary source
Xenbase:XB-GENE-942175
See related
Ensembl:ENSXETG00000007384 AllianceGenome:Xenbase:XB-GENE-942175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
pf16; PF-16; repro-sa-1
Summary
Orthologous to human SPAG6 (sperm associated antigen 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See spag6 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (26740184..26817444, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (18445361..18521190, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 3 Neighboring gene phosphatidylinositol-5-phosphate 4-kinase, type II, alpha Neighboring gene BMI1 proto-oncogene, polycomb ring finger Neighboring gene COMM domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC97619

General protein information

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Preferred Names
sperm-associated antigen 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015976.2 → NP_001015976.1  sperm-associated antigen 6

    See identical proteins and their annotated locations for NP_001015976.1

    Status: PROVISIONAL

    Source sequence(s)
    CR848372
    UniProtKB/TrEMBL
    A0A6I8QGQ9, F6WZC6, F7BFU3, Q5EB40
    Related
    ENSXETP00000059390.3, ENSXETT00000063406.3
    Conserved Domains (3) summary
    COG5064
    Location:79 → 415
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:298 → 325
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:121 → 152
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    26740184..26817444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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