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MYC2 transcription factor MYC2 [ Solanum lycopersicum (tomato) ]

Gene ID: 544165, updated on 1-Nov-2024

Summary

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Gene symbol
MYC2
Gene description
transcription factor MYC2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
JA3; LEJA3; JAMYC2; LeMYC2; SlMYC2; BHLH147
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Genomic context

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See MYC2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 8 NC_090807.1 (63020067..63022551)
103 previous assembly SL3.0 (GCF_000188115.4) 8 NC_015445.3 (60990353..60992837)

Chromosome 8 - NC_090807.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 20 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD9 Neighboring gene uncharacterized LOC104648971 Neighboring gene uncharacterized LOC104648970 Neighboring gene protein HAIKU1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SlMYC2 promotes SlLBD40-mediated cell expansion in tomato fruit development. Liu L, et al. Plant J, 2024 Jun. PMID 38481350
  2. SlMYC2 are required for methyl jasmonate-induced tomato fruit resistance to Botrytis cinerea. Min D, et al. Food Chem, 2020 Apr 25. PMID 31816533
  3. SlMYC2 Involved in Methyl Jasmonate-Induced Tomato Fruit Chilling Tolerance. Min D, et al. J Agric Food Chem, 2018 Mar 28. PMID 29528226
  4. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Du M, et al. Plant Cell, 2017 Aug. PMID 28733419, Free PMC Article
  5. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SlMYC2 promotes SlLBD40-mediated cell expansion in tomato fruit development.
    Title: SlMYC2 promotes SlLBD40-mediated cell expansion in tomato fruit development.
  2. MYC2 expression and role in the fruit resistance to Botrytis cinerea infection.
    Title: SlMYC2 are required for methyl jasmonate-induced tomato fruit resistance to Botrytis cinerea.
  3. MYC2 and the MTF ETHYLENE RESPONSE FACTOR.C3 form a transcription module that preferentially regulates pathogen-responsive genes.
    Title: MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
  4. Methyl Jasmonate markedly induced the MYC2 expression; increased proline content, lycopene content, and antioxidant enzyme activities and involved in chilling tolerance.
    Title: SlMYC2 Involved in Methyl Jasmonate-Induced Tomato Fruit Chilling Tolerance.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYC2
Names
Basic helix-loop-helix protein 147
DNA binding protein
Transcription factor bHLH147
bHLH transcription factor bHLH147
jasmonic acid 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324483.1 → NP_001311412.1  transcription factor MYC2

    Status: VALIDATED

    Source sequence(s)
    AEKE03003144, AK321527
    UniProtKB/Swiss-Prot
    A0A3Q7HRZ6, U5YT97
    Conserved Domains (2) summary
    pfam14215
    Location:94 → 277
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    cd11449
    Location:506 → 583
    bHLH_AtAIB_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein ABA-INDUCIBLE bHLH-TYPE (AIB) and similar proteins

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090807.1 Reference SLM_r2.1 Primary Assembly

    Range
    63020067..63022551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A3Q7HRZ6.1 GenPept UniProtKB/Swiss-Prot:A0A3Q7HRZ6

Gene LinkOut

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