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LOC544055 elongation factor 1-alpha [ Solanum lycopersicum (tomato) ]

Gene ID: 544055, updated on 9-Nov-2023

Summary

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Gene symbol
LOC544055
Gene description
elongation factor 1-alpha
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
LeEF-1
Summary
The alpha subunit of elongation factor-1 is involved in the elongation of polypeptide chain. It catalyzes the binding of aminoacyl tRNAs to the A site of the ribosome in the presence of GTP during protein synthesis. [provided by RefSeq, Apr 2016]
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Genomic context

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See LOC544055 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (35531..38085)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (35532..38086)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104647748 Neighboring gene F-box/FBD/LRR-repeat protein At1g13570-like Neighboring gene protein NRT1/ PTR FAMILY 3.1-like Neighboring gene vacuolar sorting protein 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and expression of elongation factor 1 alpha in tomato. Pokalsky AR, et al. Nucleic Acids Res, 1989 Jun 26. PMID 2748335, Free PMC Article
  2. Nucleotide sequence of an EF-1 alpha genomic clone from tomato. Shewmaker CK, et al. Nucleic Acids Res, 1990 Jul 25. PMID 2377481, Free PMC Article
  3. The activation process of Arabidopsis thaliana A1 gene encoding the translation elongation factor EF-1 alpha is conserved among angiosperms. Curie C, et al. Plant Mol Biol, 1992 Apr. PMID 1600144
  4. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor 1-alpha
Names
EF-1-alpha
NP_001234035.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247106.2 → NP_001234035.1  elongation factor 1-alpha

    See identical proteins and their annotated locations for NP_001234035.1

    Status: VALIDATED

    Source sequence(s)
    AK326450
    UniProtKB/Swiss-Prot
    P17786
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    35531..38085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P17786.1 GenPept UniProtKB/Swiss-Prot:P17786

Gene LinkOut

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Molecular Biology Databases