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THox2 homeobox 2 protein [ Solanum lycopersicum (tomato) ]

Gene ID: 544030, updated on 9-Nov-2023

Summary

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Gene symbol
THox2
Gene description
homeobox 2 protein
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See THox2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 8 NC_015445.3 (63583583..63588208)
102 previous assembly SL2.50 (GCF_000188115.3) 8 NC_015445.2 (63462855..63467478)

Chromosome 8 - NC_015445.3Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-2 Neighboring gene U6 spliceosomal RNA Neighboring gene phospholipase PLDb1 Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001311183.1 → NP_001298112.1  homeobox 2 protein

    Status: VALIDATED

    Source sequence(s)
    AK325838, DB708143
    UniProtKB/TrEMBL
    A0A3Q7IPR5, Q9ZRB8
    Conserved Domains (3) summary
    pfam03790
    Location:45 → 82
    KNOX1; KNOX1 domain
    pfam03791
    Location:108 → 156
    KNOX2; KNOX2 domain
    pfam05920
    Location:253 → 292
    Homeobox_KN; Homeobox KN domain

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015445.3 Reference SL3.0 Primary Assembly

    Range
    63583583..63588208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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