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JERF3 GCC box binding protein C.4 [ Solanum lycopersicum (tomato) ]

Gene ID: 543910, updated on 1-Nov-2024

Summary

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Gene symbol
JERF3
Gene description
GCC box binding protein C.4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlERF-E3; Sl-ERF-C-4
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Genomic context

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See JERF3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 3 NC_090802.1 (67193008..67195477)
103 previous assembly SL3.0 (GCF_000188115.4) 3 NC_015440.3 (71835592..71838067)

Chromosome 3 - NC_090802.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RSL1-like Neighboring gene subtilisin-like protease SBT1.5 Neighboring gene uncharacterized LOC138347330 Neighboring gene phosphoinositide phosphatase SAC2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance. Wang H, et al. Plant Mol Biol, 2004 May. PMID 15604674
  2. Comprehensive Profiling of Ethylene Response Factor Expression Identifies Ripening-Associated ERF Genes and Their Link to Key Regulators of Fruit Ripening in Tomato. Liu M, et al. Plant Physiol, 2016 Mar. PMID 26739234, Free PMC Article
  3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GCC box binding protein C.4
Names
RAP2.2-2 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247533.2 → NP_001234462.2  GCC box binding protein C.4

    Status: VALIDATED

    Source sequence(s)
    AK325304, BT013179
    UniProtKB/TrEMBL
    A0A2K8BHC6
    Conserved Domains (1) summary
    smart00380
    Location:115 → 172
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090802.1 Reference SLM_r2.1 Primary Assembly

    Range
    67193008..67195477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010320106.4 → XP_010318408.1  GCC box binding protein C.4 isoform X1

    UniProtKB/TrEMBL
    A0A2K8BHC6
    Conserved Domains (1) summary
    smart00380
    Location:115 → 172
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  2. XM_026029793.2 → XP_025885578.1  GCC box binding protein C.4 isoform X3

    UniProtKB/TrEMBL
    A0A2K8BHC6
    Conserved Domains (1) summary
    smart00380
    Location:105 → 162
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  3. XM_010320107.4 → XP_010318409.1  GCC box binding protein C.4 isoform X2

    UniProtKB/TrEMBL
    A0A2K8BHC6
    Conserved Domains (1) summary
    smart00380
    Location:105 → 162
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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