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LOC542493 golden plant 2 [ Zea mays ]

Gene ID: 542493, updated on 14-Dec-2023

Summary

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Gene symbol
LOC542493
Gene description
golden plant 2
Locus tag
ZEAMMB73_Zm00001d039260
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GLK13; GRMZM2G087804
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Genomic context

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See LOC542493 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (1587187..1591915)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (750258..754986)

Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene Triose phosphate/phosphate translocator TPT chloroplastic Neighboring gene dnaJ protein Neighboring gene uncharacterized LOC103649532 Neighboring gene Protein NUCLEAR FUSION DEFECTIVE 6 chloroplastic/mitochondrial Neighboring gene OB-fold nucleic acid binding domain containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Four mutant alleles elucidate the role of the G2 protein in the development of C(4) and C(3) photosynthesizing maize tissues. Cribb L, et al. Genetics, 2001 Oct. PMID 11606553, Free PMC Article
  2. The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size. Bommert P, et al. Nature, 2013 Oct 24. PMID 24025774
  3. The maize golden2 gene defines a novel class of transcriptional regulators in plants. Rossini L, et al. Plant Cell, 2001 May. PMID 11340194, Free PMC Article
  4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Galpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size
    Title: The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
golden plant 2
Names
golden plant2
transcription factor ZmGLK1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112043.1 → NP_001105513.1  golden plant 2

    See identical proteins and their annotated locations for NP_001105513.1

    Status: PROVISIONAL

    Source sequence(s)
    AF318579
    UniProtKB/TrEMBL
    B6SVM7, Q9FUL9
    Conserved Domains (1) summary
    PLN03162
    Location:151 → 451
    PLN03162; golden-2 like transcription factor; Provisional

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    1587187..1591915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008675216.3 → XP_008673438.1  golden plant 2 isoform X1

    See identical proteins and their annotated locations for XP_008673438.1

    UniProtKB/TrEMBL
    A0A1D6MES1, B6SVM7
    Conserved Domains (1) summary
    PLN03162
    Location:151 → 449
    PLN03162; golden-2 like transcription factor; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials